BICAN: Cell Census of Developing Brain
Developmental mouse brain common coordinate framework
core
Authors
Fae N. Kronman, Josephine K. Liwang, Rebecca Betty, Daniel J. Vanselow, Yuan-Ting Wu, Nicholas J. Tustison, Ashwin Bhandiwad, Steffy B. Manjila, Jennifer A. Minteer, Donghui Shin, Choong Heon Lee, Rohan Patil, Jeffrey T. Duda, Jian Xue, Yingxi Lin, Keith C. Cheng, Luis Puelles, James C. Gee, Jiangyang Zhang, Lydia Ng & Yongsoo Kim
Citation
Kronman, F.N., Liwang, J.K., Betty, R. et al. Developmental mouse brain common coordinate framework. Nat Commun 15, 9072 (2024). https://doi.org/10.1038/s41467-024-53254-w
Summary
We created a 3D developmental common coordinate framework (DevCCF) spanning embryonic day (E)11.5, E13.5, E15.5, E18.5, and postnatal day (P)4, P14, and P56. The DevCCF is an openly accessible resource for multi-study data integration to advance our understanding of brain development.
Data and Tools
Resource Name | Resource URL | Description |
|---|---|---|
DevCCF | https://doi.org/10.6084/m9.figshare.26377171 | Data download: Figshare release of files for E11., E13.5, E15.5, E18.5, P4, P14 and P56 mouse brain CCF. |
Figshare: unwarped LSFM templates | https://doi.org/10.6084/m9.figshare.26492122 | Data download: Unwarped LSFM templates for 7 ages of developing mouse brain. |
DevCCF Interactive Viewer | https://
kimlab.io/brain-map/DevCCF/ | Data exploration: Lab site for DevCCF. |