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BICAN: Cell Census of Developing Brain

Conservation and alteration of mammalian striatal interneurons

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Emily K. Corrigan, Michael DeBerardine, Aunoy Poddar, Miguel Turrero García, Sean de la O, Siting He, Harsha Sen, Mariana Duhne, Shanti Lindberg, Menygi Song, Matthew T. Schmitz, Karen Sears, Ricardo Mallarino, Joshua D. Berke, Corey C. Harwell, Mercedes F. Paredes, Fenna M. Krienen, Alex A. Pollen

Authors

Emily K. Corrigan, Michael DeBerardine, Aunoy Poddar, Miguel Turrero García, Sean de la O, Siting He, Harsha Sen, Mariana Duhne, Shanti Lindberg, Menygi Song, Matthew T. Schmitz, Karen Sears, Ricardo Mallarino, Joshua D. Berke, Corey C. Harwell, Mercedes F. Paredes, Fenna M. Krienen, Alex A. Pollen

Citation

Corrigan, E., et al. Conservation and alteration of mammalian striatal interneurons. Nature (2025). https://doi.org/10.1038/s41586-025-09592-w

Summary


We survey gene expression from 10 mammalian species, spanning 160 million years of divergence, and discover that TAC3 interneurons, previously thought to be a primate specific population, instead represent a conserved, ancestral population with modified gene expression and distribution throughout evolution. This finding suggests that brain evolution among mammals occurs through fate refinement of initial classes during development, rather than the generation of entirely novel populations.

Data and Tools

Resource Name
Resource URL
Description
Hotspot Code
https://github.com/YosefLab/Hotspot
Code Repository: hotspotsc v1.1.1 code for identifying informative genes and gene modules in a single-cell dataset.
Github scripts and annotation files
https://github.com/mdeber/Corrigan2024
Code Repository: python multi-species analysis code.

The Brain Cell Data Center (BCDC) at the Allen Institute for Brain Science provides a foundational community resource on cell types in the mammalian brain by sharing the integrated data, tools, and knowledge produced by the BRAIN Initiative Cell Atlas Network (BICAN).

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